obot roadmap · requirement #28 · 2026-07-12

gsm.safety v1.0.0 RC1 — qualification evidence

The release candidate on release/v1.0.0 adopts safety.viz v1.2.0 in full: one htmlwidget binding per shipped renderer (all seven, including the v1.2.0 eDISH hepatic safety explorer), a report workflow and runnable example for each, canonical pharmaverseadam demo data shared byte-identical with the JS demos, and a qcthat qualification matrix linking every test to its GitHub issue. Everything below renders from that branch, unmerged, parked at the review gate.

7 / 7

widgets render, verified end-to-end

issue-linked tests, all passing

0 · 0 · 0

errors / warnings / notes — devtools::check()

report workflows run via gsm.core::RunWorkflow()

Working examples

Each page is the standalone HTML the widget's inst/examples/ runner writes — the real interactive charts on the full demo extracts (controls, filters, and linked listings live).

Histogram

Widget_Histogram() · gsm.safety#30 · adbds

Result distributions with normal-range overlays, binning controls, grouped small multiples, and a linked participant listing.

Open the rendered widget →

Shift Plot

Widget_ShiftPlot() · gsm.safety#32 · adbds

Baseline-versus-comparison shift view pairing each participant across visits, with visit and stat controls.

Open the rendered widget →

Delta-Delta

Widget_DeltaDelta() · gsm.safety#33 · adbds

Per-participant change on two measures at once — ALT vs AST by default — with an optional regression line.

Open the rendered widget →

Results Over Time

Widget_ResultsOverTime() · gsm.safety#34 · adbds

Longitudinal view of results by visit with grouping and normal-range context.

Open the rendered widget →

Outlier Explorer

Widget_OutlierExplorer() · gsm.safety#35 · adbds

Participant-level line traces over time for spotting outlying trajectories per measure.

Open the rendered widget →

AE Timelines

Widget_AeTimelines() · gsm.safety#36 · adae

Per-participant adverse-event timelines colored by severity, with seriousness and body-system filters.

Open the rendered widget →

Hepatic Safety Explorer

Widget_HepExplorer() · gsm.safety#40 · adbds

eDISH scatter of peak liver measures with Hy's Law quadrants and participant drill-down to standardized values by study day.

Open the rendered widget →

Qualification matrix (qcthat, milestone v1.0.0)

qcthat::QCMilestones("v1.0.0") — 1 milestone, 11 issues, 47 tests, all passing. Raw artifacts: text · JSON.

5 tests gsm.safety#30 — Add Widget_Histogram htmlwidget consuming the safety.viz bundle

Widget_Histogram returns an htmlwidget carrying the histogram payload (#30)
Widget_Histogram passes width, height, and elementId through (#30)
Widget_Histogram rejects invalid inputs via the histogram contract (#30)
Widget_Histogram renders standalone HTML with the SafetyViz bundle and data (#30)
safety_histogram workflow renders an HTML report from ExampleData (#30, #38)

5 tests gsm.safety#32 — Add Widget_ShiftPlot htmlwidget consuming the safety.viz bundle

Widget_ShiftPlot returns an htmlwidget carrying the shift-plot payload (#32)
Widget_ShiftPlot passes width, height, and elementId through (#32)
Widget_ShiftPlot rejects invalid inputs via the shift-plot contract (#32)
Widget_ShiftPlot renders standalone HTML with the SafetyViz bundle and data (#32)
safety_shift_plot workflow renders an HTML report from ExampleData (#32, #38)

5 tests gsm.safety#33 — Add Widget_DeltaDelta htmlwidget consuming the safety.viz bundle

Widget_DeltaDelta returns an htmlwidget carrying the delta-delta payload (#33)
Widget_DeltaDelta passes width, height, and elementId through (#33)
Widget_DeltaDelta rejects invalid inputs via the delta-delta contract (#33)
Widget_DeltaDelta renders standalone HTML with the SafetyViz bundle and data (#33)
safety_delta_delta workflow renders an HTML report from ExampleData (#33, #38)

5 tests gsm.safety#34 — Add Widget_ResultsOverTime htmlwidget consuming the safety.viz bundle

Widget_ResultsOverTime returns an htmlwidget carrying the payload (#34)
Widget_ResultsOverTime passes width, height, and elementId through (#34)
Widget_ResultsOverTime rejects invalid inputs via the results-over-time contract (#34)
Widget_ResultsOverTime renders standalone HTML with the SafetyViz bundle and data (#34)
safety_results_over_time workflow renders an HTML report from ExampleData (#34, #38)

5 tests gsm.safety#35 — Add Widget_OutlierExplorer htmlwidget consuming the safety.viz bundle

Widget_OutlierExplorer returns an htmlwidget carrying the outlier-explorer payload (#35)
Widget_OutlierExplorer passes width, height, and elementId through (#35)
Widget_OutlierExplorer rejects invalid inputs via the outlier-explorer contract (#35)
Widget_OutlierExplorer renders standalone HTML with the SafetyViz bundle and data (#35)
safety_outlier_explorer workflow renders an HTML report from ExampleData (#35, #38)

5 tests gsm.safety#36 — Add Widget_AeTimelines htmlwidget consuming the safety.viz bundle

Widget_AeTimelines returns an htmlwidget carrying the ae-timelines payload (#36)
Widget_AeTimelines passes width, height, and elementId through (#36)
Widget_AeTimelines rejects invalid inputs via the ae-timelines contract (#36)
Widget_AeTimelines renders standalone HTML with the SafetyViz bundle and data (#36)
ae_timelines workflow renders an HTML report from ExampleData (#36, #38)

5 tests gsm.safety#40 — Sync to safety.viz v1.2.0 and add Widget_HepExplorer (eDISH)

Widget_HepExplorer returns an htmlwidget carrying the hep-explorer payload (#40)
Widget_HepExplorer passes width, height, and elementId through (#40)
Widget_HepExplorer rejects invalid inputs via the hep-explorer contract (#40)
Widget_HepExplorer renders standalone HTML with the SafetyViz bundle and data (#40)
hep_explorer workflow renders an HTML report from ExampleData (#40, #38)

12 tests gsm.safety#31 — Vendor the safety.viz v1.1.0 bundle and shared htmlwidget infrastructure

package metadata is available (#31)
gsm.safety exports the seven safety.viz widgets plus data and report helpers (#31)
every widget ships its htmlwidgets binding, dependency yaml, schema, and report workflow (#31, #38)
the legacy safetyCharts bridge is fully retired (#31)
BuildWidgetPayload returns the htmlwidget x payload for valid input (#31)
BuildWidgetPayload serializes empty settings as a JSON object (#31)
BuildWidgetPayload errors when a schema-default column is missing (#31)
BuildWidgetPayload errors when a settings override names a missing column (#31)
BuildWidgetPayload checks nested object settings like ae-timelines color (#31)
BuildWidgetPayload validates its inputs (#31)
SaveWidgetReport writes a self-contained HTML report and returns its path (#31)
SaveWidgetReport keeps an existing .html extension and validates inputs (#31)

4 tests gsm.safety#37 — Ship canonical pharmaverseadam demo data (adbds/adae) for examples and QC

ExampleData reads the adbds example data with sensible types (#37)
ExampleData reads the adae example data with sensible types (#37)
ExampleData converts blank numeric fields to NA without warnings (#37)
ExampleData defaults to adbds and rejects unknown datasets (#37)

8 tests gsm.safety#38 — Modernize report workflows to the Widget_* renderers

safety_delta_delta workflow renders an HTML report from ExampleData (#33, #38)
hep_explorer workflow renders an HTML report from ExampleData (#40, #38)
safety_outlier_explorer workflow renders an HTML report from ExampleData (#35, #38)
every widget ships its htmlwidgets binding, dependency yaml, schema, and report workflow (#31, #38)
safety_results_over_time workflow renders an HTML report from ExampleData (#34, #38)
safety_shift_plot workflow renders an HTML report from ExampleData (#32, #38)
ae_timelines workflow renders an HTML report from ExampleData (#36, #38)
safety_histogram workflow renders an HTML report from ExampleData (#30, #38)

1 test gsm.safety#27 — Add QCThat testing framework

every test in the package carries a qcthat issue reference (#27)

no tests gsm.safety#28 — Add pkgdown widget thumbnail gallery

No tests — the pkgdown gallery (gsm.safety#28) is the deliberate post-RC lane on this milestone.

Provenance

Branch	`release/v1.0.0` at `00761ea` (fourteen commits over `main`, one per issue lane)
Bundle	`safety.viz-1.2.0/safety.viz.js` vendored from the safety.viz v1.2.0 release; per-module JSON data contracts vendored alongside
Data	`adbds.csv` / `adae.csv` byte-identical to the safety.viz site demos (pharmaverseadam, hub #25); unchanged between v1.1.0 and v1.2.0
Checks	`devtools::check()` clean (0/0/0) on R 4.3.3, macOS; full suite 230 assertions, 0 failures
Verification	each lane's example script and workflow re-run fresh by independent verifier agents; rendered HTML asserted to embed the SafetyViz bundle, the widget binding, and real data
Reproduce	`Rscript inst/examples/<slug>.R <outdir>` per renderer, or `gsm.core::RunWorkflow()` on `inst/workflow/3_reports/<id>.yaml`

Drafted by Claude Code (Fable 5) for review by @jwildfire · gsm.safety RC1 ultracode session, 2026-07-12