The coefficients of the grid the correlation matrix opens on, as a table:
one row per pair of variables, with R's coefficient and its interval and the
pair's own count. A matrix reports no p-values, so none is written. The
numbers are Analyze_CorrelationMatrix()'s on the frame the chart hands R.
Usage
Table_CorrelationMatrix(dfResults, dfParticipants = NULL, lSettings = list())Arguments
- dfResults
data.frameLong-format results, one row per participant, biomarker and visit. Column names are supplied bylSettings; the defaults expectUSUBJID/TEST/STRESN/VISIT/VISITNUM/STRESU, the columns of Synthetic_Results.- dfParticipants
data.frameOne row per participant, orNULL. With it the chart has filters; it also says who the participants are. Default:NULL.- lSettings
listbio.viz correlation matrix settings, asWidget_CorrelationMatrix()takes them, andtitle,subtitleandfootnotes. Default:list().
Value
A data.frame of text: Variable 1 and Variable 2, then
Statistic, Method, Estimate, Counts, p-value and Note, with the
attributes of Table_GroupComparison().
Titles and footnotes
As for Visualize_CorrelationMatrix(): {heading}, {variables},
{visit}, {value}, {n}, {filters}, {date} and {version}.
Display rules
A p-value is written to three decimals, p < 0.001 below that and
p > 0.999 above, never with stars. Every row is labelled exploratory, with
its adjustment named when it has one. An estimate is written to four
significant digits with its confidence interval. A statistic R did not
compute has no p-value, and its note is R's reason.
Examples
Table_CorrelationMatrix(
Synthetic_Results,
Synthetic_Participants,
lSettings = list(visit = "Baseline")
)
#> Variable 1 Variable 2 Statistic Method
#> 1 CRP D-dimer Correlation Pearson's product-moment correlation
#> 2 CRP Ferritin Correlation Pearson's product-moment correlation
#> 3 CRP IFN-gamma Correlation Pearson's product-moment correlation
#> 4 CRP IL-1beta Correlation Pearson's product-moment correlation
#> 5 CRP IL-2 Correlation Pearson's product-moment correlation
#> 6 CRP IL-6 Correlation Pearson's product-moment correlation
#> 7 CRP IL-8 Correlation Pearson's product-moment correlation
#> 8 CRP IL-10 Correlation Pearson's product-moment correlation
#> 9 CRP LDH Correlation Pearson's product-moment correlation
#> 10 CRP TNF-alpha Correlation Pearson's product-moment correlation
#> 11 CRP VEGF Correlation Pearson's product-moment correlation
#> 12 D-dimer Ferritin Correlation Pearson's product-moment correlation
#> 13 D-dimer IFN-gamma Correlation Pearson's product-moment correlation
#> 14 D-dimer IL-1beta Correlation Pearson's product-moment correlation
#> 15 D-dimer IL-2 Correlation Pearson's product-moment correlation
#> 16 D-dimer IL-6 Correlation Pearson's product-moment correlation
#> 17 D-dimer IL-8 Correlation Pearson's product-moment correlation
#> 18 D-dimer IL-10 Correlation Pearson's product-moment correlation
#> 19 D-dimer LDH Correlation Pearson's product-moment correlation
#> 20 D-dimer TNF-alpha Correlation Pearson's product-moment correlation
#> 21 D-dimer VEGF Correlation Pearson's product-moment correlation
#> 22 Ferritin IFN-gamma Correlation Pearson's product-moment correlation
#> 23 Ferritin IL-1beta Correlation Pearson's product-moment correlation
#> 24 Ferritin IL-2 Correlation Pearson's product-moment correlation
#> 25 Ferritin IL-6 Correlation Pearson's product-moment correlation
#> 26 Ferritin IL-8 Correlation Pearson's product-moment correlation
#> 27 Ferritin IL-10 Correlation Pearson's product-moment correlation
#> 28 Ferritin LDH Correlation Pearson's product-moment correlation
#> 29 Ferritin TNF-alpha Correlation Pearson's product-moment correlation
#> 30 Ferritin VEGF Correlation Pearson's product-moment correlation
#> 31 IFN-gamma IL-1beta Correlation Pearson's product-moment correlation
#> 32 IFN-gamma IL-2 Correlation Pearson's product-moment correlation
#> 33 IFN-gamma IL-6 Correlation Pearson's product-moment correlation
#> 34 IFN-gamma IL-8 Correlation Pearson's product-moment correlation
#> 35 IFN-gamma IL-10 Correlation Pearson's product-moment correlation
#> 36 IFN-gamma LDH Correlation Pearson's product-moment correlation
#> 37 IFN-gamma TNF-alpha Correlation Pearson's product-moment correlation
#> 38 IFN-gamma VEGF Correlation Pearson's product-moment correlation
#> 39 IL-1beta IL-2 Correlation Pearson's product-moment correlation
#> 40 IL-1beta IL-6 Correlation Pearson's product-moment correlation
#> 41 IL-1beta IL-8 Correlation Pearson's product-moment correlation
#> 42 IL-1beta IL-10 Correlation Pearson's product-moment correlation
#> 43 IL-1beta LDH Correlation Pearson's product-moment correlation
#> 44 IL-1beta TNF-alpha Correlation Pearson's product-moment correlation
#> 45 IL-1beta VEGF Correlation Pearson's product-moment correlation
#> 46 IL-2 IL-6 Correlation Pearson's product-moment correlation
#> 47 IL-2 IL-8 Correlation Pearson's product-moment correlation
#> 48 IL-2 IL-10 Correlation Pearson's product-moment correlation
#> 49 IL-2 LDH Correlation Pearson's product-moment correlation
#> 50 IL-2 TNF-alpha Correlation Pearson's product-moment correlation
#> 51 IL-2 VEGF Correlation Pearson's product-moment correlation
#> 52 IL-6 IL-8 Correlation Pearson's product-moment correlation
#> 53 IL-6 IL-10 Correlation Pearson's product-moment correlation
#> 54 IL-6 LDH Correlation Pearson's product-moment correlation
#> 55 IL-6 TNF-alpha Correlation Pearson's product-moment correlation
#> 56 IL-6 VEGF Correlation Pearson's product-moment correlation
#> 57 IL-8 IL-10 Correlation Pearson's product-moment correlation
#> 58 IL-8 LDH Correlation Pearson's product-moment correlation
#> 59 IL-8 TNF-alpha Correlation Pearson's product-moment correlation
#> 60 IL-8 VEGF Correlation Pearson's product-moment correlation
#> 61 IL-10 LDH Correlation Pearson's product-moment correlation
#> 62 IL-10 TNF-alpha Correlation Pearson's product-moment correlation
#> 63 IL-10 VEGF Correlation Pearson's product-moment correlation
#> 64 LDH TNF-alpha Correlation Pearson's product-moment correlation
#> 65 LDH VEGF Correlation Pearson's product-moment correlation
#> 66 TNF-alpha VEGF Correlation Pearson's product-moment correlation
#> Estimate Counts p-value
#> 1 -0.1274, 95% confidence interval -0.2615 to 0.01158 n = 200
#> 2 0.02159, 95% confidence interval -0.1175 to 0.1599 n = 200
#> 3 0.07135, 95% confidence interval -0.06806 to 0.208 n = 200
#> 4 0.1587, 95% confidence interval 0.02044 to 0.2911 n = 200
#> 5 -0.0701, 95% confidence interval -0.2068 to 0.06932 n = 200
#> 6 0.01976, 95% confidence interval -0.1193 to 0.1581 n = 200
#> 7 -0.1135, 95% confidence interval -0.2483 to 0.02565 n = 200
#> 8 -0.06857, 95% confidence interval -0.2054 to 0.07084 n = 200
#> 9 -0.02666, 95% confidence interval -0.1648 to 0.1125 n = 200
#> 10 -0.05072, 95% confidence interval -0.1881 to 0.08864 n = 200
#> 11 -0.02671, 95% confidence interval -0.1648 to 0.1124 n = 200
#> 12 0.09559, 95% confidence interval -0.04373 to 0.2313 n = 200
#> 13 0.05669, 95% confidence interval -0.0827 to 0.1939 n = 200
#> 14 0.1209, 95% confidence interval -0.01815 to 0.2554 n = 200
#> 15 0.01077, 95% confidence interval -0.1282 to 0.1493 n = 200
#> 16 0.0828, 95% confidence interval -0.05659 to 0.219 n = 200
#> 17 0.04558, 95% confidence interval -0.09376 to 0.1832 n = 200
#> 18 -0.1443, 95% confidence interval -0.2775 to -0.005671 n = 200
#> 19 -0.01227, 95% confidence interval -0.1508 to 0.1267 n = 200
#> 20 -0.07589, 95% confidence interval -0.2124 to 0.06352 n = 200
#> 21 -0.0106, 95% confidence interval -0.1491 to 0.1283 n = 200
#> 22 -0.02203, 95% confidence interval -0.1603 to 0.1171 n = 200
#> 23 0.07067, 95% confidence interval -0.06875 to 0.2074 n = 200
#> 24 -0.04467, 95% confidence interval -0.1823 to 0.09466 n = 200
#> 25 0.132, 95% confidence interval -0.006849 to 0.2659 n = 200
#> 26 -0.04729, 95% confidence interval -0.1848 to 0.09205 n = 200
#> 27 -0.01905, 95% confidence interval -0.1574 to 0.12 n = 200
#> 28 -0.101, 95% confidence interval -0.2364 to 0.03827 n = 200
#> 29 0.01963, 95% confidence interval -0.1194 to 0.1579 n = 200
#> 30 -0.03188, 95% confidence interval -0.1699 to 0.1073 n = 200
#> 31 0.002546, 95% confidence interval -0.1362 to 0.1412 n = 200
#> 32 -0.02813, 95% confidence interval -0.1662 to 0.111 n = 200
#> 33 -0.04752, 95% confidence interval -0.185 to 0.09182 n = 200
#> 34 0.0131, 95% confidence interval -0.1259 to 0.1516 n = 200
#> 35 -0.09172, 95% confidence interval -0.2276 to 0.04762 n = 200
#> 36 0.05757, 95% confidence interval -0.08183 to 0.1948 n = 200
#> 37 -0.1337, 95% confidence interval -0.2675 to 0.005162 n = 200
#> 38 0.1038, 95% confidence interval -0.03543 to 0.2391 n = 200
#> 39 -0.03623, 95% confidence interval -0.1741 to 0.103 n = 200
#> 40 0.03298, 95% confidence interval -0.1062 to 0.1709 n = 200
#> 41 -0.02945, 95% confidence interval -0.1675 to 0.1097 n = 200
#> 42 -0.08792, 95% confidence interval -0.2239 to 0.05145 n = 200
#> 43 -0.05742, 95% confidence interval -0.1946 to 0.08198 n = 200
#> 44 0.01195, 95% confidence interval -0.127 to 0.1504 n = 200
#> 45 0.01344, 95% confidence interval -0.1255 to 0.1519 n = 200
#> 46 -0.07443, 95% confidence interval -0.211 to 0.06498 n = 200
#> 47 -0.08067, 95% confidence interval -0.217 to 0.05873 n = 200
#> 48 -0.06472, 95% confidence interval -0.2017 to 0.07469 n = 200
#> 49 0.1072, 95% confidence interval -0.03202 to 0.2423 n = 200
#> 50 -0.00149, 95% confidence interval -0.1402 to 0.1373 n = 200
#> 51 -0.02712, 95% confidence interval -0.1652 to 0.112 n = 200
#> 52 -0.02469, 95% confidence interval -0.1629 to 0.1144 n = 200
#> 53 0.07963, 95% confidence interval -0.05977 to 0.216 n = 200
#> 54 -0.1824, 95% confidence interval -0.3132 to -0.04477 n = 200
#> 55 0.1515, 95% confidence interval 0.01306 to 0.2843 n = 200
#> 56 -0.1167, 95% confidence interval -0.2514 to 0.02241 n = 200
#> 57 -0.004427, 95% confidence interval -0.1431 to 0.1344 n = 200
#> 58 0.03797, 95% confidence interval -0.1013 to 0.1758 n = 200
#> 59 -0.1075, 95% confidence interval -0.2426 to 0.0317 n = 200
#> 60 0.01106, 95% confidence interval -0.1279 to 0.1496 n = 200
#> 61 -0.0564, 95% confidence interval -0.1936 to 0.08299 n = 200
#> 62 0.6384, 95% confidence interval 0.5482 to 0.7139 n = 200
#> 63 -0.05727, 95% confidence interval -0.1945 to 0.08212 n = 200
#> 64 -0.04959, 95% confidence interval -0.187 to 0.08977 n = 200
#> 65 0.04551, 95% confidence interval -0.09382 to 0.1831 n = 200
#> 66 -0.1104, 95% confidence interval -0.2454 to 0.02873 n = 200
#> Note
#> 1 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 2 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 3 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 4 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 5 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 6 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 7 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 8 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 9 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 10 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 11 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 12 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 13 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 14 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 15 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 16 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 17 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 18 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 19 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 20 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 21 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 22 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 23 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 24 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 25 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 26 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 27 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 28 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 29 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 30 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 31 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 32 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 33 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 34 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 35 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 36 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 37 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 38 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 39 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 40 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 41 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 42 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 43 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 44 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 45 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 46 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 47 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 48 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 49 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 50 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 51 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 52 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 53 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 54 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 55 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 56 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 57 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 58 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 59 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 60 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 61 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 62 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 63 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 64 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 65 No p-value: a matrix reports each coefficient, its interval and its pair count.
#> 66 No p-value: a matrix reports each coefficient, its interval and its pair count.