Daily diary: 2026-07-22 — Session 2

The night Stage 2 closed and Stage 3 was born. @jwildfire merged and tagged gsm.safety v1.0.0 — the all-inclusive "safety.viz released" gate — while the DILI toolchain finished its paper-to-prototype day by landing on dev, and a collaborator's composite-plot question became a requirement, a design, and by 3:34am a four-PR draft stack. In between, the autonomy requirement went from empty Design section to approved-and-implemented in one evening: @jwildfire live-reviewed the --auto design, decided all ten judgement calls — including starting at A1, routine unattended merges, skipping the training wheels — and signed off with "continue with implementation overnight"; by close the launcher, goal layer, grant matrix, and skill changes were a draft PR awaiting his morning approval, gated by the design's own rule that autonomy may never widen its own grants unattended.

📊 Session report (dated 07-23 — the session spanned midnight; per-session report slugs await oa#32)

Work completed

gsm.safety v1.0.0 shipped — Stage 2 closes (@jwildfire's merge + tag, ~22:00). PR #39 merged and v1.0.0 published: nine interactive safety widgets on the vendored safety.viz 1.4.0 bundle, schema-validated inputs, pharmaverseadam demo data, standalone reports, full qcthat qualification — and the safetyCharts bridge retired. Fifteen gsm.safety issues auto-closed with the release. The stage model's Stage-2 gate ("safety.viz released", all-inclusive) is done; hub #28 moves to Released at this wrapup and Diary #8 — the ship story — is queued (hub #22).

Autonomy: hub #18 designed, approved, and implemented in one evening (😺🤖 session 2, Fable 5). The session-init delta caught v1.0.0 landing mid-evening, then the focus work ran the whole lifecycle: design doc drafted and published (goals → increments → sessions; --auto on /session-init selects-and-proceeds instead of present-and-stop; unattended wrapup that drafts but never posts; kill switches from halt-file to budget caps), /goal built-in facts verified against current docs, then a live review: design approved same-day with every call decided — start at A1 (draft-only A0 "proven already" by the ⚡️ overnight record), issue closes everywhere except hub Requirements (those close via release promotion PRs), a policy-file carve-out so unattended merges can never touch the autonomy machinery itself, gsm.safety promoted to the standard merge tier, releases prep-yes/publish-never, maiden run = sv#85. Implementation shipped overnight on the sign-off: oa#39 → oa PR#40 (session-init --auto mode + session-wrapup Unattended variant, goals/{charts,app}.md, obot-auto launcher with fail-fast pre-flight, autonomy-grants.json at level A1, merge-policy + gsm.safety tiers; QC green; ⚠️ in the carve-out lane — merges only with @jwildfire's approval), and gs#44 done and verified: dev created at the v1.0.0 tip and made default, main protected mirroring safety.viz. New identity for the fleet: autonomous sessions are 🦾🤖, purple.

DILI tools land on dev (⚡️🤖 abnbl-dili-tools, evening close). @jwildfire approved the consolidated sv#97 and decided O1 (keep the severity tier) + O4 (synthetic ABN-BL cohort OK): both new charts shipped marked Prototype — a new shell.prototypeBanner() in-chart notice that travels with the widget plus a gallery badge — and the branch merged to dev via the lane (851afe5, 674 unit / 187 e2e). Impl issues sv#91/#92/#93 closed. The full chain ran paper-to-dev inside one day: PubMed 39932652 → roadmap#43 → design → oa#38 (155 requirement rows, merged) → migration Sankey + ALT waterfall on dev, awaiting a v1.5 release train.

Participant profile: question → requirement → overnight four-PR stack (😺🤖 bg + ⚡️🤖 participant-profile). A collaborator's drill-down question became a design-options report (four options + hybrid recommendation), then hub#45 with D1–D5 locked (A+D hybrid: standalone renderer + dock default; full original parity including the sparkline inset; worst-first cohort stepper; stacked on the hep-core split; whole lab family) and sub-issues sv#98/#99. The overnight ultracode run (3 workflows, ~4.3M subagent tokens, 42 agents, zero errors) shipped the stacked draft train: sv#100 hep-core split → #101 module + dock + hep adoption (Closes #98, #53) → #102 outlier/shift/delta-delta → #103 histogram/qt, plus oa#41 (27 PPRF requirement rows + an HEP-ARM-001 TRTA fix). 912 unit / 208 e2e green at the tip during the run; the wrapup delta caught the current tip CI red on browser-test baselines — the known evidence-update/loop-prevention gotcha, recovery queued below. Results-over-time deferred to sv#87; #99 stays open as the rollout tracker.

PRs / issues touched

• Merged: gs PR#39 (@jwildfire — v1.0.0), sv#97 → dev (obot-merge), oa#38.
• Released: gsm.safety v1.0.0.
• Opened: oa#39 + oa PR#40 (draft, carve-out lane), gs#44 (delivered same-night, awaiting close), sv#100–#103 draft stack + oa#41, hub#45 + sv#98/#99.
• Closed: sv#91/#92/#93 (delivered via #97), sv PR#94/#95/#96 (superseded), ~15 gsm.safety issues (release sweep).
• Advanced: hub#18 → Development with an approved Design, hub#28 → Released (this wrapup), hub#43 implementation complete on dev.

Blockers / risks

• sv stack tip CI red (browser baselines — evidence-update commits as github-actions[bot], whose push doesn't retrigger CI): re-run as jwildfire queued at this wrapup; requirements:check stays pending until oa#41 merges.
• The new closes-grant isn't wired into the permission scaffold — agent issue-closes still denied (hit twice tonight: gs#44, and hub#41 remains open); wiring it is itself a carve-out change for a reviewed session.
• oa PR#40 unmerged means the --auto skills aren't live on obot.agent main yet — the workspace symlinks read main, so the maiden run waits on the morning approval.
• open.gismo obotclaw install still pending — gates G2 --auto increments and that repo's merge lane.

Next session: loose ends

1. Morning review: oa PR#40 approve + merge (carve-out lane) → maiden A1 run: obot.agent/scripts/obot-auto --increment jwildfire/safety.viz#85 (@jwildfire triggers; --preflight-only first is free) (hub#18).
2. Participant-profile merge train (hub#45): oa#41 first (clears requirements:check), then sv#100→#101→#102→#103 via the lane once tip CI is green; en-route decisions: stale hep-core-split remote branch delete, .hep-core-split-proof.md location, SSP-API-003 rewording (PR#102).
3. Diary #8 outline — the gsm.safety v1.0 ship story (hub#22).
4. Carried: keynote-plan report (#10) · og plan rewrite app-first (#34) · release skill (oa#36, now incl. requirement-closes-on-release-PR) · status page (hub#44; gsm.safety DEV STATUS heals on this deploy) · obot-merge hardening (oa#37) · hub PR#42 + #9 D1–D4 · nep #35 · board hygiene (sv#83–89 + oa#32/#36/#37 untracked) · rollup lane after --auto ships (O6).

🙋 ToDo (@jwildfire)

• oa PR#40 merge approval (policy-file carve-out), then the maiden-run trigger.
• Close clicks (agent closes still blocked): gs#44, hub#41, open-but-Released #2/#3/#21/#30.
• Stack decisions: stale hep-core-split remote branch delete (needs your deletion approval), .hep-core-split-proof.md location, SSP-API-003 rewording (PR#102).
• Carried admin: hub PR#42 review; obotclaw installs (open.gismo, jwildfire.github.io); Gilead PR#151; hub #3 §7; LinkedIn; deletions approval.

This diary entry was drafted by Claude Code using Fable 5 during a live working session and reviewed by @jwildfire.